List of participants of the BioHackathon 2019 (who registered only for the symposium day will not be included in this list). |
Participants
Name | Project | Affiliation | Profile |
---|---|---|---|
Alshahrani, Mona | Knowledge graphs analysis, OntoBert | King Abdullah University of Science and Technology (KAUST), Saudi Arabia | |
Antezana, Erick | Agrisemantics | Norwegian University of Science and Technology, Norway & Bayer CropScience, Belgium | |
Aoki, Nobuyuki | https://glytoucan.org | SparqLite LLC., Japan | https://sparqlite.com/contact |
Arai, Yutaro | Slow-Walkers, Inc., Japan | ||
Araki, Hiromitsu | Kyushu University, Japan | ||
Asano, Yui | PubCaseFinder | PENQE, Inc., Japan | |
Ashine, Rei | Kyoto University, Japan | ||
Boland, Miguel d'Arcangues | European Bioinformatics Institute (EMBL-EBI), UK | ||
Bolleman, Jerven Tjalling | UniProt, Rhea | SIB Swiss Institute of Bioinformatics, Switzerland | |
Bolton, Evan | Pubchem | National Center for Biotechnology Information (NCBI), USA | |
Bono, Hidemasa | TogoEx | Database Center for Life Science (DBCLS), ROIS, Japan | https://orcid.org/0000-0003-4413-0651 |
Busby, Ben | SNPChips --> Haplotypes --> EMRs | ||
Buske, Orion | PhenoTips | PhenoTips/Gene42, Canada | |
Buttigieg, Pier Luigi | Semantic approaches to bridge biology and planetary science | Alfred Wegener Institute (AWI), Germany | https://orcid.org/0000-0002-4366-3088 |
Byrd, William E | HayaDomain Architecture Matching for protein identification | Hugh Kaul Precision Medicine Institute/Computer Science, University of Alabama at Birmingham, USA | http://webyrd.net/ |
Chiba, HIrokazu * | Ortholog Ontology | Database Center for Life Science (DBCLS), ROIS, Japan | |
Crusoe, Michael Robin | Common Workflow Language standards | Common Workflow Language (CWL) project & ELIXIR-Netherlands | https://orcid.org/0000-0002-2961-9670 |
Dominguez Del Angel, Victoria | Create a Binder appliance on IFB Cloud | Institut Français de Bioinformatique (IFB), Elixir-FR (Elixir-France), France | |
Dumontier, Michel | privacy-preserving distributed machine learning | Maastricht University, Netherlands | |
Fischer, Jens Christian | Variant Graph Visualization | University of Tennessee Health Science Center (UTHSC), USA | |
Fujino, Takeshi | Tiny Cloud Engine (TCE), CWL | The University of Tokyo, Japan | |
Fujita, Akihiro | Glycosmos | Soka University, Japan | GitHub |
Fujiwara, Toyofumi * | PubCaseFinder | Database Center for Life Science (DBCLS), ROIS, Japan | |
Garcia Castro, Alexander | jorunal of research objects | BASF, Spain | |
Garcia Castro, Leyla Jael | Bioschemas validator | ZB MED Information Centre for Life Sciences, Germany | |
Garrison, Erik | A memory efficient genome variation graph server | University of California, Santa Cruz (UCSC) , USA | http://www.hypervolu.me/~erik/erik_garrison.html |
Goto, Naohisa | BioRuby | RIMD, Osaka University, Japan | |
Goto, Susumu * | jPOST | Database Center for Life Science (DBCLS), ROIS, Japan | |
Hatanaka, Hideki | Database Center for Life Science (DBCLS), ROIS, Japan | ||
Heumos, Simon | Graph Genome Browser | Quantitative Biology Center (QBiC), Germany | |
Higuchi, Chihiro | DruMAP-RDF | National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN), Japan | |
Hirahara, Reika | PENQE, Inc., Japan | ||
Hoehndorf, Robert | DeepGO, Evaluating knowledge graph embeddings | King Abdullah University of Science and Technology (KAUST), Saudi Arabia | |
Ikeda, Shuya | RefEx | Database Center for Life Science (DBCLS), ROIS, Japan | |
Ingulsrud, Joel | Slow-Walkers, Inc., Japan | ||
Ishii, Manabu | CWL, Nextflow, Galaxy, Workflow | RIKEN, Japan | |
Jupp, Simon James Borrie | Semantics as a Service | European Bioinformatics Institute (EMBL-EBI), UK | https://www.ebi.ac.uk/about/people/simon-jupp |
Kalvari, Ioanna | Automating the Rfam non-coding RNA annotation pipeline using CWL | The European Bioinformatics Institute (EMBL-EBI), UK | https://www.ebi.ac.uk/about/people/ioanna-kalvari |
Kamada, Mayumi | MGeND/med2RDF | Kyoto University, Japan | |
Kanegae, Hiromi | National Agriculture and Food Research Organization (NARO), Japan | ||
Kanitz, Alexander | WES-ELIXIR - A language-agnostic workflow execution service for the cloud | Swiss Institute of Bioinformatics (SIB) / ELIXIR Switzerland | |
Kasahara, Masahiro | Tiny Cloud Engine (TCE), Local Package Manager (LPM) | The University of Tokyo, Japan | |
Kasukawa, Takeya | FANTOM, refTSS | RIKEN Center for Integrative Medical Sciences (IMS), Japan | |
Katayama, Toshiaki * | TogoGenome, BioRuby | Database Center for Life Science (DBCLS), ROIS, Japan | |
Katsuragi, Tetsuo | National Agriculture and Food Research Organization (NARO), Japan | ||
Kawamoto, Shoko | National BioResource Project(NBRP) | National Institute of Genetics(NIG), Japan | |
Kawasaki, Ryo | Slow-Walkers, Inc., Japan | ||
Kawashima, Shuichi * | NBDC RDF Portal, TogoGenome | Database Center for Life Science (DBCLS), ROIS, Japan | |
Kim, Jin-Dong * | PubAnnotation, LODQA | Database Center for Life Science (DBCLS), ROIS, Japan | |
Kimura, Gaku | Japan Software Management Co. Ltd., Japan | ||
Kobayashi, Norio | LOD Surfer, RIKEN Metadatabase | RIKEN, Japan | |
Kohara, Yuji * | Director | Database Center for Life Science (DBCLS), ROIS, Japan | |
Kojima, Ryosuke | Kyoto University, Japan | ||
Kozaki, Kouji | LOD Surfer, IOBC, ontology-based data integration | Osaka Electro-Communication University (OECU) , Japan | |
Kulmanov, Maxat | DeepGOPlus | King Abdullah University of Science and Technology (KAUST), Saudi Arabia | |
Kume, Satoshi | Image database, Deep learning for images | RIKEN Center for Biosystems Dynamics Research (RIKEN BDR), Japan | https://www.researchgate.net/profile/Satoshi_Kume |
Kushida, Tatsuya | NikkajiRDF, IOBC, DruMAP-RDF | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | https://orcid.org/0000-0002-0784-4113 |
Labra Gayo, Jose Emilio | RDFShape-Cytoscape | University of Oviedo, Spain | http://labra.weso.es/ |
Lee, Sunmyoung | Soka University, Japan | ||
Liener, Thomas | Gherkin inspired RDF validation | ||
Magono, Akimichi | Slow-Walkers, Inc., Japan | ||
Mariethoz, Julien | Glycomics@ExPASy | Swiss Institute of Bioinformatics (SIB), Switzerland | |
Marshall, Mariel Lee | StagePage Canada, Canada | ||
Masuya, Hiroshi | Ontologies for plant phenotype, LOD Surfer, RIKEN MetaDatabase, AgingMiner, PubCaseFinder | RIKEN BioResource Research Center, Japan | https://info.brc.riken.jp/ |
Minowa, Mari T | Database Center for Life Science (DBCLS), ROIS, Japan | ||
Mishima, Hiroyuki | HeapGestalt | Department of Human Genetics, Nagasaki University, Japan | |
Mitsuhashi, Nobutaka | TogoVar | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | https://biosciencedbc.jp/about-us/organization/ |
Momma, Norikazu | Hitachi, Ltd., Japan | ||
Moriya, Yuki * | TogoGenome, jPOST | Database Center for Life Science (DBCLS), ROIS, Japan | |
Mungall, Chris John | Lawrence Berkeley National Laboratory (LBNL) , USA | http://berkeleybop.org/people/chris-mungall/ | |
Nagano, Akio | PENQE, Inc., Japan | ||
Naito, Yuki | GGGenome, PPPeptide, CRISPRdirect | Database Center for Life Science (DBCLS), ROIS, Japan | LinkeIn |
Nakazato, Takeru | Gendoo, DBCLS SRA | Database Center for Life Science (DBCLS), ROIS, Japan | |
Ninomiya, Kota | Graduate School of Pharmaceutical Sciences, The University of Tokyo, Japan | ||
Nishida, Kozo | Dash Bio | RIKEN, Japan | |
Nishiyama, Keiichiro | Osaka Electro Comunication University, Japan | ||
Ogishima, Soichi | HPO Japanese | ToMMo, Tohoku University, Japan | https://www.megabank.tohoku.ac.jp/english/about/member/department05/#ogishima |
Ohta, Tazro * | Pitagora Galaxy, ChIP-Atlas | Database Center for Life Science (DBCLS), ROIS, Japan | |
Oishi, Naoya | TogoEx, Gendoo, AOE, DBCLS SRA | dogrun Inc., Japan | |
Okabeppu, Yoko | OKBP Inc., Japan | ||
Oki, Shinya * | ChIP-Atlas | Kyushu University, Japan | https://orcid.org/0000-0002-4767-3259 |
Okuda, Shujiro | jPOST, Glycosmos | Niigata University, Japan | |
Ono, Hiromasa | RefEx | Database Center for Life Science (DBCLS), ROIS, Japan | |
Osana, Yasunori | Portable FPGA acceleration framework | University of the Ryukyus, Japan | |
Prins, Pjotr | Variant Graph for GWA | University of Tennessee Health Science Center (UTHSC), USA | http://thebird.nl/ |
Queralt Rosinach, Núria | Graph-based Drug Repositioning | Scripps Research (SR), USA | |
Sakuma, Keiko * | Database Center for Life Science (DBCLS), ROIS, Japan | ||
Satoh, Daisuke | TogoVar | Lifematics Inc., Japan | |
Schmidt, Ralf | Department for Bioinformatics University of Basel, Switzerland | ||
Seaman, Josiah David | Graph Genome Browser | Royal Botanic Gardens Kew, UK | |
Shin, Jaemoon | PubCaseFinder | Database Center for Life Science (DBCLS), ROIS, Japan | |
Shinkai, Norio | RIKEN, Japan | ||
Shinmachi, Daisuke | GlyCosmos | SparqLite LLC., Japan | |
Shiota, Masaaki | GlyCosmos | Soka University, Japan | |
Sirén, Jouni | GBWTGraph | University of California Santa Cruz (UCSC), USA | https://iki.fi/jouni.siren/ |
Stevens, Garrett J | JBrowse 2 | University of California Berkeley (UC Berkeley), USA | |
Suetake, Hirotaka | SAPPORO, tonkaz | The University of Tokyo, Japan | GitHub |
Tago, Shin-ichiro | med2rdf | Fujitsu Laboratories Ltd., Japan | |
Takagi, Toshihisa * | Director | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | |
Takami, Tomoyo | jPOST | Kyushu University, Japan | |
Takatsuki, Terue * | Database Center for Life Science (DBCLS), ROIS, Japan | ||
Takeo, Nario | Slow-Walkers, Inc., Japan | ||
Tanaka, Satoshi | Mass++, jPOST | Trans-IT, Japan | |
Tanaka, Yoshihisa | med2rdf, link prediction | Kyoto University, Japan | |
Tanjo, Tomoya | CWL, Pitagora Galaxy | National Institute of Informatics (NII), Japan | https://orcid.org/0000-0002-4421-9659 |
Tateisi, Yuka | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | ||
Toyo-oka, Licht | TogoVar | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | |
Tsuchiya, Shinichiro | Glycosmos | Graduate School of Engineering, Soka University, Japan | |
Unni, Deepak Raveendran | BioLink Model | Lawrence Berkeley National Laboratory (LBNL) , USA | |
Watanabe, Yu | jPOST, GlyCosmos | Niigata University, Japan | |
Weiland, Claus | GCN4bio, FLOPO | Senckenberg Biodiversity and Climate Research Centre (SBIK-F), Germany | https://www.researchgate.net/profile/Claus_Weiland |
Wu, Chunlei | BioThings API, Schema Playground | Scripps Research, USA | |
Yamada, Issaku | Glycoinformatics, WURCS | The Noguchi Institute, Japan | |
Yamada, Ryota | fuku inc (fuku), Japan | https://twitter.com/roy29fuku | |
Yamaguchi, Atsuko * | SPARQL Builder | Database Center for Life Science (DBCLS), ROIS, Japan | |
Yamamoto, Yasunori * | Umaka Suite, Allie, Colil | Database Center for Life Science (DBCLS), ROIS, Japan | |
Yamanaka, Ryota | G2GML, Med2RDF | Oracle Corporation, Thailand | |
Yatsuzuka, Shigeru | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | ||
Yokoi, Kakeru | The National Agriculture and Food Research Organization (NARO), Japan | ||
Yokoyama, Toshiyuki * | Graph Genomes | The University of Tokyo, Japan | |
Yoshizawa, Akiyasu C | jPOST, PPPeptide, Mass++ | Graduate School of Pharmaceutical Sciences, Kyoto University (Kyoto U.), Japan |
Showing 121 items