List of participants of the BioHackathon 2019 (who registered only for the symposium day will not be included in this list). |
| Name | Project | Affiliation | Profile |
|---|
| Alshahrani, Mona | Knowledge graphs analysis, OntoBert | King Abdullah University of Science and Technology (KAUST), Saudi Arabia | | | Antezana, Erick | Agrisemantics | Norwegian University of Science and Technology, Norway & Bayer CropScience, Belgium | LinkedIn | | Aoki, Nobuyuki | https://glytoucan.org | SparqLite LLC., Japan | https://sparqlite.com/contact | | Arai, Yutaro | | Slow-Walkers, Inc., Japan | | | Araki, Hiromitsu | | Kyushu University, Japan | | | Asano, Yui | PubCaseFinder | PENQE, Inc., Japan | | | Ashine, Rei | | Kyoto University, Japan | | | Boland, Miguel d'Arcangues | | European Bioinformatics Institute (EMBL-EBI), UK | | | Bolleman, Jerven Tjalling | UniProt, Rhea | SIB Swiss Institute of Bioinformatics, Switzerland | LinkedIn | | Bolton, Evan | Pubchem | National Center for Biotechnology Information (NCBI), USA | LinkedIn | | Bono, Hidemasa | TogoEx | Database Center for Life Science (DBCLS), ROIS, Japan | https://orcid.org/0000-0003-4413-0651 | | Busby, Ben | SNPChips --> Haplotypes --> EMRs | | LinkedIn | | Buske, Orion | PhenoTips | PhenoTips/Gene42, Canada | LinkedIn | | Buttigieg, Pier Luigi | Semantic approaches to bridge biology and planetary science | Alfred Wegener Institute (AWI), Germany | https://orcid.org/0000-0002-4366-3088 | | Byrd, William E | HayaDomain Architecture Matching for protein identification | Hugh Kaul Precision Medicine Institute/Computer Science, University of Alabama at Birmingham, USA | http://webyrd.net/ | | Chiba, HIrokazu * | Ortholog Ontology | Database Center for Life Science (DBCLS), ROIS, Japan | | | Crusoe, Michael Robin | Common Workflow Language standards | Common Workflow Language (CWL) project & ELIXIR-Netherlands | https://orcid.org/0000-0002-2961-9670 | | Dominguez Del Angel, Victoria | Create a Binder appliance on IFB Cloud | Institut Français de Bioinformatique (IFB), Elixir-FR (Elixir-France), France | LinkedIn | | Dumontier, Michel | privacy-preserving distributed machine learning | Maastricht University, Netherlands | LinkedIn | | Fischer, Jens Christian | Variant Graph Visualization | University of Tennessee Health Science Center (UTHSC), USA | | | Fujino, Takeshi | Tiny Cloud Engine (TCE), CWL | The University of Tokyo, Japan | | | Fujita, Akihiro | Glycosmos | Soka University, Japan | GitHub | | Fujiwara, Toyofumi * | PubCaseFinder | Database Center for Life Science (DBCLS), ROIS, Japan | | | Garcia Castro, Alexander | jorunal of research objects | BASF, Spain | LinkedIn | | Garcia Castro, Leyla Jael | Bioschemas validator | ZB MED Information Centre for Life Sciences, Germany | | | Garrison, Erik | A memory efficient genome variation graph server | University of California, Santa Cruz (UCSC) , USA | http://www.hypervolu.me/~erik/erik_garrison.html | | Goto, Naohisa | BioRuby | RIMD, Osaka University, Japan | LinkedIn | | Goto, Susumu * | jPOST | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Hatanaka, Hideki | | Database Center for Life Science (DBCLS), ROIS, Japan | | | Heumos, Simon | Graph Genome Browser | Quantitative Biology Center (QBiC), Germany | LinkedIn | | Higuchi, Chihiro | DruMAP-RDF | National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN), Japan | | | Hirahara, Reika | | PENQE, Inc., Japan | | | Hoehndorf, Robert | DeepGO, Evaluating knowledge graph embeddings | King Abdullah University of Science and Technology (KAUST), Saudi Arabia | LinkedIn | | Ikeda, Shuya | RefEx | Database Center for Life Science (DBCLS), ROIS, Japan | | | Ingulsrud, Joel | | Slow-Walkers, Inc., Japan | | | Ishii, Manabu | CWL, Nextflow, Galaxy, Workflow | RIKEN, Japan | LinkedIn | | Jupp, Simon James Borrie | Semantics as a Service | European Bioinformatics Institute (EMBL-EBI), UK | https://www.ebi.ac.uk/about/people/simon-jupp | | Kalvari, Ioanna | Automating the Rfam non-coding RNA annotation pipeline using CWL | The European Bioinformatics Institute (EMBL-EBI), UK | https://www.ebi.ac.uk/about/people/ioanna-kalvari | | Kamada, Mayumi | MGeND/med2RDF | Kyoto University, Japan | | | Kanegae, Hiromi | | National Agriculture and Food Research Organization (NARO), Japan | LinkedIn | | Kanitz, Alexander | WES-ELIXIR - A language-agnostic workflow execution service for the cloud | Swiss Institute of Bioinformatics (SIB) / ELIXIR Switzerland | LinkedIn | | Kasahara, Masahiro | Tiny Cloud Engine (TCE), Local Package Manager (LPM) | The University of Tokyo, Japan | | | Kasukawa, Takeya | FANTOM, refTSS | RIKEN Center for Integrative Medical Sciences (IMS), Japan | LinkedIn | | Katayama, Toshiaki * | TogoGenome, BioRuby | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Katsuragi, Tetsuo | | National Agriculture and Food Research Organization (NARO), Japan | | | Kawamoto, Shoko | National BioResource Project(NBRP) | National Institute of Genetics(NIG), Japan | | | Kawasaki, Ryo | | Slow-Walkers, Inc., Japan | | | Kawashima, Shuichi * | NBDC RDF Portal, TogoGenome | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Kim, Jin-Dong * | PubAnnotation, LODQA | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Kimura, Gaku | | Japan Software Management Co. Ltd., Japan | | | Kobayashi, Norio | LOD Surfer, RIKEN Metadatabase | RIKEN, Japan | LinkedIn | | Kohara, Yuji * | Director | Database Center for Life Science (DBCLS), ROIS, Japan | | | Kojima, Ryosuke | | Kyoto University, Japan | | | Kozaki, Kouji | LOD Surfer, IOBC, ontology-based data integration | Osaka Electro-Communication University (OECU) , Japan | LinkedIn | | Kulmanov, Maxat | DeepGOPlus | King Abdullah University of Science and Technology (KAUST), Saudi Arabia | LinkedIn | | Kume, Satoshi | Image database, Deep learning for images | RIKEN Center for Biosystems Dynamics Research (RIKEN BDR), Japan | https://www.researchgate.net/profile/Satoshi_Kume | | Kushida, Tatsuya | NikkajiRDF, IOBC, DruMAP-RDF | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | https://orcid.org/0000-0002-0784-4113 | | Labra Gayo, Jose Emilio | RDFShape-Cytoscape | University of Oviedo, Spain | http://labra.weso.es/ | | Lee, Sunmyoung | | Soka University, Japan | | | Liener, Thomas | Gherkin inspired RDF validation | | LinkedIn | | Magono, Akimichi | | Slow-Walkers, Inc., Japan | | | Mariethoz, Julien | Glycomics@ExPASy | Swiss Institute of Bioinformatics (SIB), Switzerland | LinkedIn | | Marshall, Mariel Lee | | StagePage Canada, Canada | LinkedIn | | Masuya, Hiroshi | Ontologies for plant phenotype, LOD Surfer, RIKEN MetaDatabase, AgingMiner, PubCaseFinder | RIKEN BioResource Research Center, Japan | https://info.brc.riken.jp/ | | Minowa, Mari T | | Database Center for Life Science (DBCLS), ROIS, Japan | | | Mishima, Hiroyuki | HeapGestalt | Department of Human Genetics, Nagasaki University, Japan | LinkedIn | | Mitsuhashi, Nobutaka | TogoVar | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | https://biosciencedbc.jp/about-us/organization/ | | Momma, Norikazu | | Hitachi, Ltd., Japan | | | Moriya, Yuki * | TogoGenome, jPOST | Database Center for Life Science (DBCLS), ROIS, Japan | | | Mungall, Chris John | | Lawrence Berkeley National Laboratory (LBNL) , USA | http://berkeleybop.org/people/chris-mungall/ | | Nagano, Akio | | PENQE, Inc., Japan | | | Naito, Yuki | GGGenome, PPPeptide, CRISPRdirect | Database Center for Life Science (DBCLS), ROIS, Japan | LinkeIn | | Nakazato, Takeru | Gendoo, DBCLS SRA | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Ninomiya, Kota | | Graduate School of Pharmaceutical Sciences, The University of Tokyo, Japan | | | Nishida, Kozo | Dash Bio | RIKEN, Japan | | | Nishiyama, Keiichiro | | Osaka Electro Comunication University, Japan | | | Ogishima, Soichi | HPO Japanese | ToMMo, Tohoku University, Japan | https://www.megabank.tohoku.ac.jp/english/about/member/department05/#ogishima | | Ohta, Tazro * | Pitagora Galaxy, ChIP-Atlas | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Oishi, Naoya | TogoEx, Gendoo, AOE, DBCLS SRA | dogrun Inc., Japan | | | Okabeppu, Yoko | | OKBP Inc., Japan | | | Oki, Shinya * | ChIP-Atlas | Kyushu University, Japan | https://orcid.org/0000-0002-4767-3259 | | Okuda, Shujiro | jPOST, Glycosmos | Niigata University, Japan | | | Ono, Hiromasa | RefEx | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Osana, Yasunori | Portable FPGA acceleration framework | University of the Ryukyus, Japan | | | Prins, Pjotr | Variant Graph for GWA | University of Tennessee Health Science Center (UTHSC), USA | http://thebird.nl/ | | Queralt Rosinach, Núria | Graph-based Drug Repositioning | Scripps Research (SR), USA | LinkedIn | | Sakuma, Keiko * | | Database Center for Life Science (DBCLS), ROIS, Japan | | | Satoh, Daisuke | TogoVar | Lifematics Inc., Japan | | | Schmidt, Ralf | | Department for Bioinformatics University of Basel, Switzerland | LinkedIn | | Seaman, Josiah David | Graph Genome Browser | Royal Botanic Gardens Kew, UK | LinkedIn | | Shin, Jaemoon | PubCaseFinder | Database Center for Life Science (DBCLS), ROIS, Japan | | | Shinkai, Norio | | RIKEN, Japan | | | Shinmachi, Daisuke | GlyCosmos | SparqLite LLC., Japan | LinkedIn | | Shiota, Masaaki | GlyCosmos | Soka University, Japan | | | Sirén, Jouni | GBWTGraph | University of California Santa Cruz (UCSC), USA | https://iki.fi/jouni.siren/ | | Stevens, Garrett J | JBrowse 2 | University of California Berkeley (UC Berkeley), USA | LinkedIn | | Suetake, Hirotaka | SAPPORO, tonkaz | The University of Tokyo, Japan | GitHub | | Tago, Shin-ichiro | med2rdf | Fujitsu Laboratories Ltd., Japan | | | Takagi, Toshihisa * | Director | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | | | Takami, Tomoyo | jPOST | Kyushu University, Japan | | | Takatsuki, Terue * | | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Takeo, Nario | | Slow-Walkers, Inc., Japan | | | Tanaka, Satoshi | Mass++, jPOST | Trans-IT, Japan | | | Tanaka, Yoshihisa | med2rdf, link prediction | Kyoto University, Japan | | | Tanjo, Tomoya | CWL, Pitagora Galaxy | National Institute of Informatics (NII), Japan | https://orcid.org/0000-0002-4421-9659 | | Tateisi, Yuka | | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | | | Toyo-oka, Licht | TogoVar | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | LinkedIn | | Tsuchiya, Shinichiro | Glycosmos | Graduate School of Engineering, Soka University, Japan | | | Unni, Deepak Raveendran | BioLink Model | Lawrence Berkeley National Laboratory (LBNL) , USA | LinkedIn | | Watanabe, Yu | jPOST, GlyCosmos | Niigata University, Japan | | | Weiland, Claus | GCN4bio, FLOPO | Senckenberg Biodiversity and Climate Research Centre (SBIK-F), Germany | https://www.researchgate.net/profile/Claus_Weiland | | Wu, Chunlei | BioThings API, Schema Playground | Scripps Research, USA | LinkedIn | | Yamada, Issaku | Glycoinformatics, WURCS | The Noguchi Institute, Japan | LinkedIn | | Yamada, Ryota | | fuku inc (fuku), Japan | https://twitter.com/roy29fuku | | Yamaguchi, Atsuko * | SPARQL Builder | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Yamamoto, Yasunori * | Umaka Suite, Allie, Colil | Database Center for Life Science (DBCLS), ROIS, Japan | LinkedIn | | Yamanaka, Ryota | G2GML, Med2RDF | Oracle Corporation, Thailand | LinkedIn | | Yatsuzuka, Shigeru | | National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST), Japan | | | Yokoi, Kakeru | | The National Agriculture and Food Research Organization (NARO), Japan | | | Yokoyama, Toshiyuki * | Graph Genomes | The University of Tokyo, Japan | | | Yoshizawa, Akiyasu C | jPOST, PPPeptide, Mass++ | Graduate School of Pharmaceutical Sciences, Kyoto University (Kyoto U.), Japan | |
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